Recovery of useful traits from isolates inhabiting an agricultural soil cultivated with herbicide-resistant poplars.
Identifieur interne : 000255 ( Main/Exploration ); précédent : 000254; suivant : 000256Recovery of useful traits from isolates inhabiting an agricultural soil cultivated with herbicide-resistant poplars.
Auteurs : Alma Balestrazzi [Italie] ; Martina Bonadei ; Samanta Zelasco ; Emanuele Quattrini ; Cinzia Calvio ; Alessandro Galizzi ; Daniela CarboneraSource :
- Canadian journal of microbiology [ 0008-4166 ] ; 2008.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Acides indolacétiques (métabolisme), Acides indolacétiques (pharmacologie), Amino-butyrates (pharmacologie), Analyse de séquence d'ADN (MeSH), Bacillus (classification), Bacillus (génétique), Bacillus (isolement et purification), Bacillus (métabolisme), Données de séquences moléculaires (MeSH), Développement des plantes (MeSH), Herbicides (pharmacologie), Microbiologie du sol (MeSH), Numération de colonies microbiennes (MeSH), Phylogenèse (MeSH), Plantes (effets des médicaments et des substances chimiques), Populus (croissance et développement), Pseudomonas (classification), Pseudomonas (génétique), Pseudomonas (isolement et purification), Pseudomonas (métabolisme), Similitude de séquences d'acides nucléiques (MeSH).
- MESH :
- composition chimique : ADN bactérien, ADN ribosomique, Bacillus, Pseudomonas.
- croissance et développement : Populus.
- effets des médicaments et des substances chimiques : Plantes.
- génétique : ADN bactérien, ADN ribosomique, ARN ribosomique 16S, Bacillus, Pseudomonas.
- isolement et purification : Bacillus, Pseudomonas.
- métabolisme : Acides indolacétiques, Bacillus, Pseudomonas.
- pharmacologie : Acides indolacétiques, Amino-butyrates, Herbicides.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Développement des plantes, Microbiologie du sol, Numération de colonies microbiennes, Phylogenèse, Similitude de séquences d'acides nucléiques.
English descriptors
- KwdEn :
- Aminobutyrates (pharmacology), Bacillus (classification), Bacillus (genetics), Bacillus (isolation & purification), Bacillus (metabolism), Colony Count, Microbial (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Herbicides (pharmacology), Indoleacetic Acids (metabolism), Indoleacetic Acids (pharmacology), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Development (MeSH), Plants (drug effects), Populus (growth & development), Pseudomonas (classification), Pseudomonas (genetics), Pseudomonas (isolation & purification), Pseudomonas (metabolism), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology, Nucleic Acid (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- chemical , metabolism : Indoleacetic Acids.
- chemical , pharmacology : Aminobutyrates, Herbicides, Indoleacetic Acids.
- classification : Bacillus, Pseudomonas.
- drug effects : Plants.
- genetics : Bacillus, Pseudomonas.
- growth & development : Populus.
- isolation & purification : Bacillus, Pseudomonas.
- metabolism : Bacillus, Pseudomonas.
- Colony Count, Microbial, Molecular Sequence Data, Phylogeny, Plant Development, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Soil Microbiology.
Abstract
The aim of this study was to investigate the culturable bacteria living in soil cultivated with Basta-tolerant transgenic white poplars (Populus alba L. 'Villafranca'). Plate Count Agar medium containing phosphinothricin, the active component of Basta, was used to isolate the herbicide-resistant bacteria (HRB). No significant changes in the size of the soil microbial flora following herbicide treatment were observed. The characterization of HRB isolates by 16S rDNA-based taxonomy revealed a predominance of Pseudomonas and Bacillus species. The screening carried out on soil samples allowed for the recovery of isolates with useful properties for biotechnological and agronomical purposes, particularly in relation to root development. Among the tested isolates, only HRB-1b, HRB-1c, and HRB-7 showed remarkable swarming ability, a valuable trait supporting the beneficial plant-microbe interactions. HRB-1c was also characterized by consistent production of indoleacetic acid (17.8 +/- 0.09 microg x mL-1 x (OD600 unit)-1), and it was able to stimulate the in vitro growth of Villafranca explants. Since novel tools are constantly required to enhance productivity of perennial species and to expand their use for practical purposes, the availability of bacteria that support tree growth, such as the HRB-1c isolate, represents a significant advantage.
DOI: 10.1139/w07-136
PubMed: 18388991
Affiliations:
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purification)</term><term>Pseudomonas (metabolism)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sequence Homology, Nucleic Acid (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (composition chimique)</term><term>ADN bactérien (génétique)</term><term>ADN ribosomique (composition chimique)</term><term>ADN ribosomique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides indolacétiques (métabolisme)</term><term>Acides indolacétiques (pharmacologie)</term><term>Amino-butyrates (pharmacologie)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Bacillus (classification)</term><term>Bacillus (génétique)</term><term>Bacillus (isolement et purification)</term><term>Bacillus (métabolisme)</term><term>Données de séquences moléculaires (MeSH)</term><term>Développement des plantes (MeSH)</term><term>Herbicides (pharmacologie)</term><term>Microbiologie du sol (MeSH)</term><term>Numération de colonies microbiennes (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Plantes (effets des médicaments et des substances chimiques)</term><term>Populus (croissance et développement)</term><term>Pseudomonas (classification)</term><term>Pseudomonas (génétique)</term><term>Pseudomonas (isolement et purification)</term><term>Pseudomonas (métabolisme)</term><term>Similitude de séquences d'acides nucléiques (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Indoleacetic Acids</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" 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Data</term><term>Phylogeny</term><term>Plant Development</term><term>Sequence Analysis, DNA</term><term>Sequence Homology, Nucleic Acid</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Développement des plantes</term><term>Microbiologie du sol</term><term>Numération de colonies microbiennes</term><term>Phylogenèse</term><term>Similitude de séquences d'acides nucléiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The aim of this study was to investigate the culturable bacteria living in soil cultivated with Basta-tolerant transgenic white poplars (Populus alba L. 'Villafranca'). Plate Count Agar medium containing phosphinothricin, the active component of Basta, was used to isolate the herbicide-resistant bacteria (HRB). No significant changes in the size of the soil microbial flora following herbicide treatment were observed. The characterization of HRB isolates by 16S rDNA-based taxonomy revealed a predominance of Pseudomonas and Bacillus species. The screening carried out on soil samples allowed for the recovery of isolates with useful properties for biotechnological and agronomical purposes, particularly in relation to root development. Among the tested isolates, only HRB-1b, HRB-1c, and HRB-7 showed remarkable swarming ability, a valuable trait supporting the beneficial plant-microbe interactions. HRB-1c was also characterized by consistent production of indoleacetic acid (17.8 +/- 0.09 microg x mL-1 x (OD600 unit)-1), and it was able to stimulate the in vitro growth of Villafranca explants. Since novel tools are constantly required to enhance productivity of perennial species and to expand their use for practical purposes, the availability of bacteria that support tree growth, such as the HRB-1c isolate, represents a significant advantage.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18388991</PMID><DateCompleted><Year>2008</Year><Month>05</Month><Day>22</Day></DateCompleted><DateRevised><Year>2012</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0008-4166</ISSN><JournalIssue CitedMedium="Print"><Volume>54</Volume><Issue>3</Issue><PubDate><Year>2008</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Canadian journal of microbiology</Title><ISOAbbreviation>Can J Microbiol</ISOAbbreviation></Journal><ArticleTitle>Recovery of useful traits from isolates inhabiting an agricultural soil cultivated with herbicide-resistant poplars.</ArticleTitle><Pagination><MedlinePgn>201-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1139/w07-136</ELocationID><Abstract><AbstractText>The aim of this study was to investigate the culturable bacteria living in soil cultivated with Basta-tolerant transgenic white poplars (Populus alba L. 'Villafranca'). Plate Count Agar medium containing phosphinothricin, the active component of Basta, was used to isolate the herbicide-resistant bacteria (HRB). No significant changes in the size of the soil microbial flora following herbicide treatment were observed. The characterization of HRB isolates by 16S rDNA-based taxonomy revealed a predominance of Pseudomonas and Bacillus species. The screening carried out on soil samples allowed for the recovery of isolates with useful properties for biotechnological and agronomical purposes, particularly in relation to root development. Among the tested isolates, only HRB-1b, HRB-1c, and HRB-7 showed remarkable swarming ability, a valuable trait supporting the beneficial plant-microbe interactions. HRB-1c was also characterized by consistent production of indoleacetic acid (17.8 +/- 0.09 microg x mL-1 x (OD600 unit)-1), and it was able to stimulate the in vitro growth of Villafranca explants. Since novel tools are constantly required to enhance productivity of perennial species and to expand their use for practical purposes, the availability of bacteria that support tree growth, such as the HRB-1c isolate, represents a significant advantage.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Balestrazzi</LastName><ForeName>Alma</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Genetics and Microbiology, University of Pavia, via Ferrata 1, Pavia 27100, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bonadei</LastName><ForeName>Martina</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Zelasco</LastName><ForeName>Samanta</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Quattrini</LastName><ForeName>Emanuele</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Calvio</LastName><ForeName>Cinzia</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Galizzi</LastName><ForeName>Alessandro</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Carbonera</LastName><ForeName>Daniela</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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Microbiol</MedlineTA><NlmUniqueID>0372707</NlmUniqueID><ISSNLinking>0008-4166</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000613">Aminobutyrates</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006540">Herbicides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D007210">Indoleacetic Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>51276-47-2</RegistryNumber><NameOfSubstance 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Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D063245" MajorTopicYN="N">Plant Development</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011549" MajorTopicYN="N">Pseudomonas</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>4</Month><Day>5</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>5</Month><Day>23</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>4</Month><Day>5</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18388991</ArticleId><ArticleId IdType="pii">w07-136</ArticleId><ArticleId IdType="doi">10.1139/w07-136</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Italie</li></country></list><tree><noCountry><name sortKey="Bonadei, Martina" sort="Bonadei, Martina" uniqKey="Bonadei M" first="Martina" last="Bonadei">Martina Bonadei</name><name sortKey="Calvio, Cinzia" sort="Calvio, Cinzia" uniqKey="Calvio C" first="Cinzia" last="Calvio">Cinzia Calvio</name><name sortKey="Carbonera, Daniela" sort="Carbonera, Daniela" uniqKey="Carbonera D" first="Daniela" last="Carbonera">Daniela Carbonera</name><name sortKey="Galizzi, Alessandro" sort="Galizzi, Alessandro" uniqKey="Galizzi A" first="Alessandro" last="Galizzi">Alessandro Galizzi</name><name sortKey="Quattrini, Emanuele" sort="Quattrini, Emanuele" uniqKey="Quattrini E" first="Emanuele" last="Quattrini">Emanuele Quattrini</name><name sortKey="Zelasco, Samanta" sort="Zelasco, Samanta" uniqKey="Zelasco S" first="Samanta" last="Zelasco">Samanta Zelasco</name></noCountry><country name="Italie"><noRegion><name sortKey="Balestrazzi, Alma" sort="Balestrazzi, Alma" uniqKey="Balestrazzi A" first="Alma" last="Balestrazzi">Alma Balestrazzi</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:18388991" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a TreeMicInterV1
| This area was generated with Dilib version V0.6.37. |  |